Table of Contents Overview Detailed commentsGeneral Abstract 1. Introduction 2. Methods2.1 Outline 2.2 Indexing super-k-mers 2.3 Lazy encoding 2.4 Probing 2.5 Superbuckets 2.6 Implementation details 3. Results3.1 Parameters 3.2 Multicore 3.4 Comparison 3.5 Query times 4. Conclusion These are some (biased) comments on Brisk, a dynamic k-mer dictionary (Smith et al. 2024). Overview As is common these days, Brisk builds a dynamic k-mer dictionary using super-kmers, like e.g. SSHash (Pibiri 2022).
