Table of Contents 1Early idea: Bottom-up match-merging (aka BUMMer?)1.1Some previous ideas 1.2Divide & conquer 1.3Bottom-up match merging (BUMMer) 1 Early idea: Bottom-up match-merging (aka BUMMer?) Link to heading TODO: Move to separate post. One thing that becomes clear with mapping is that we don’t quite know where exactly to start the semi-global alignments. This can be fixed by adding some buffer/padding, but this remains slightly ugly and iffy.
